If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 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'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ), 'gf_id' => 'HOM05D000796', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000796' ), 'data_identifier' => 'HOM05D000796', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000796', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '742', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p07730' => 'bna', 'A01p31210' => 'bna', 'A02p25800' => 'bna', 'A03p25170' => 'bna', 'A03p43390' => 'bna', 'A03p59860' => 'bna', 'A07p08540' => 'bna', 'A09p00740' => 'bna', 'A09p26990' => 'bna', 'Aa31LG1G11320' => 'aar', 'Aa31LG2G20090' => 'aar', 'Aa31LG5G150' => 'aar', 'Aa31LG6G4660' => 'aar', 'Aa31LG8G10430' => 'aar', 'Aa31LG9G10300' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5245' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1900' => 'aag', 'Actinidia02631' => 'ach', 'Actinidia12251' => 'ach', 'Actinidia14461' => 'ach', 'Actinidia21259' => 'ach', 'Actinidia24768' => 'ach', 'Actinidia25028' => 'ach', 'Actinidia33474' => 'ach', 'Actinidia35842' => 'ach', 'Ah.04g149370' => 'amhyb', 'Ah.05g174370' => 'amhyb', 'Ah.12g058280' => 'amhyb', 'Ah.13g077960' => 'amhyb', 'Ah.14g084190' => 'amhyb', 'AL1G10320' => 'aly', 'AL3G38810' => 'aly', 'AL4G44410' => 'aly', 'AL6G47110' => 'aly', 'AL6G53400' => 'aly', 'AL7G21710' => 'aly', 'Aqoxy2G03935' => 'aox', 'Aqoxy4G01252' => 'aox', 'Aqoxy7G00660' => 'aox', 'Aqoxy7G03257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.EB8TWM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ISNY9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K1R19W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MR8QAM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.USYB3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W7KXM9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XST0L2' => 'arhy', 'AT1G02000' => 'ath', 'AT2G45310' => 'ath', 'AT3G23820' => 'ath', 'AT4G00110' => 'ath', 'AT4G12250' => 'ath', 'AT4G30440' => 'ath', 'ATR0064G107' => 'atr', 'ATR0561G031' => 'atr', 'ATR0580G053' => 'atr', 'ATR0782G226' => 'atr', 'Atru.chr1.660' => 'acertr', 'Atru.chr4.1580' => 'acertr', 'Atru.chr5.292' => 'acertr', 'Atru.chr7.448' => 'acertr', 'AUR62004196' => 'cqu', 'AUR62017396' => 'cqu', 'AUR62018558' => 'cqu', 'AUR62020860' => 'cqu', 'AUR62028399' => 'cqu', 'AUR62039762' => 'cqu', 'BcaB01g01560' => 'bca', 'BcaB01g02179' => 'bca', 'BcaB01g02211' => 'bca', 'BcaB01g03272' => 'bca', 'BcaB01g03273' => 'bca', 'BcaB03g14611' => 'bca', 'BcaB04g20418' => 'bca', 'BcaB05g23074' => 'bca', 'BcaB05g23760' => 'bca', 'BcaB06g26546' => 'bca', 'BcaC01g03362' => 'bca', 'BcaC01g05141' => 'bca', 'BcaC02g11780' => 'bca', 'BcaC03g16307' => 'bca', 'BcaC04g21217' => 'bca', 'BcaC04g21218' => 'bca', 'BcaC04g21219' => 'bca', 'BcaC04g24201' => 'bca', 'BcaC06g35578' => 'bca', 'BcaC09g51837' => 'bca', 'BcaNung00548' => 'bca', 'BcaNung02988' => 'bca', 'BcaNung05288' => 'bca', 'BolC1t00842H' => 'bol', 'BolC1t03930H' => 'bol', 'BolC2t09610H' => 'bol', 'BolC2t10131H' => 'bol', 'BolC3t15348H' => 'bol', 'BolC3t17593H' => 'bol', 'BolC7t41826H' => 'bol', 'BolC7t46249H' => 'bol', 'BolC9t52947H' => 'bol', 'BolC9t56268H' => 'bol', 'BraA01t00716Z' => 'bra', 'BraA01t03246Z' => 'bra', 'BraA02t07573Z' => 'bra', 'BraA03t11717Z' => 'bra', 'BraA03t13477Z' => 'bra', 'BraA03t15043Z' => 'bra', 'BraA07t28638Z' => 'bra', 'BraA09t35686Z' => 'bra', 'BraA09t38269Z' => 'bra', 'C01p08600' => 'bna', 'C01p39760' => 'bna', 'C02p41150' => 'bna', 'C03p30010' => 'bna', 'C03p53320' => 'bna', 'C04p11470' => 'bna', 'C07p13320' => 'bna', 'C07p57910' => 'bna', 'C09p00120' => 'bna', 'C09p34240' => 'bna', 'CAN.G1155.31' => 'can', 'CAN.G1190.27' => 'can', 'CAN.G152.21' => 'can', 'CAN.G295.6' => 'can', 'CAN.G388.30' => 'can', 'CAN.G551.9' => 'can', 'CAN.G630.89' => 'can', 'CAN.G72.5' => 'can', 'CAN.G767.13' => 'can', 'CANSAT11G1045' => 'cansat', 'CANSAT21G1236' => 'cansat', 'CANSAT56G0654' => 'cansat', 'CANSAT78G0533' => 'cansat', 'CARHR000360' => 'chi', 'CARHR036500' => 'chi', 'CARHR099820' => 'chi', 'CARHR140510' => 'chi', 'CARHR238340' => 'chi', 'CARHR248150' => 'chi', 'CARHR254010' => 'chi', 'Carub.0003s2413' => 'cru', 'Carub.0004s2794' => 'cru', 'Carub.0006s3138' => 'cru', 'Carub.0006s3712' => 'cru', 'Carub.0007s1016' => 'cru', 'Ca_12277_v3' => 'car', 'Ca_16402_v3' => 'car', 'Ca_19955_v3' => 'car', 'Ca_21164_v3' => 'car', 'Ca_26426_v3' => 'car', 'CBR_g10961' => 'cbr', 'CBR_g38213' => 'cbr', 'CBR_g54790' => 'cbr', 'Cc00_g27010' => 'ccan', 'Cc00_g31940' => 'ccan', 'Cc02_g24030' => 'ccan', 'Cc08_g13180' => 'ccan', 'CDE02G1025' => 'cde', 'CDE02G1432' => 'cde', 'CDE02G1729' => 'cde', 'CDE02G4118' => 'cde', 'CDE09G1161' => 'cde', 'CDE11G0028' => 'cde', 'CDE11G0644' => 'cde', 'CDE12G0178' => 'cde', 'Cfa001746' => 'cfa', 'Cfa009354' => 'cfa', 'Cfa012805' => 'cfa', 'Cfa014997' => 'cfa', 'Cfa019610' => 'cfa', 'Ciclev10004881m.g' => 'ccl', 'Ciclev10005072m.g' => 'ccl', 'Ciclev10008355m.g' => 'ccl', 'Ciclev10020187m.g' => 'ccl', 'Ciclev10020257m.g' => 'ccl', 'CiPaw.01G117100' => 'cil', 'CiPaw.01G263200' => 'cil', 'CiPaw.02G064600' => 'cil', 'CiPaw.02G169000' => 'cil', 'CiPaw.07G237300' => 'cil', 'CiPaw.11G148100' => 'cil', 'CiPaw.13G056300' => 'cil', 'CiPaw.15G174500' => 'cil', 'ClCG06G012770' => 'cla', 'ClCG10G003090' => 'cla', 'ClCG11G012660' => 'cla', 'COL.COLO4_12530' => 'col', 'COL.COLO4_20226' => 'col', 'COL.COLO4_23884' => 'col', 'Cpa.g.sc127.53' => 'cpa', 'Cpa.g.sc157.50' => 'cpa', 'Cpa.g.sc18.107' => 'cpa', 'Cpa.g.sc29.97' => 'cpa', 'Cpa.g.sc32.110' => 'cpa', 'Cre06.g278143' => 'cre', 'CsaV3_1G029310' => 'csa', 'CsaV3_2G007810' => 'csa', 'CsaV3_2G011740' => 'csa', 'CsaV3_3G003130' => 'csa', 'CsaV3_3G009770' => 'csa', 'CsaV3_3G016290' => 'csa', 'CSS0012851' => 'camsi', 'CSS0016774' => 'camsi', 'CSS0019523' => 'camsi', 'CSS0026171' => 'camsi', 'CSS0038473' => 'camsi', 'CSS0039134' => 'camsi', 'DCAR_000854' => 'dca', 'DCAR_008554' => 'dca', 'DCAR_017935' => 'dca', 'DCAR_024535' => 'dca', 'DCAR_026652' => 'dca', 'DCAR_031521' => 'dca', 'Dinv22970' => 'din', 'Dinv27200' => 'din', 'Dinv38174' => 'din', 'Dinv39085' => 'din', 'Dinv42796' => 'din', 'Dinv43305' => 'din', 'Duzib068G1275' => 'dzi', 'Duzib133G1076' => 'dzi', 'Duzib138G0010' => 'dzi', 'Duzib138G0575' => 'dzi', 'Duzib150G1191' => 'dzi', 'Duzib151G0865' => 'dzi', 'Duzib168G1404' => 'dzi', 'Duzib187G0752' => 'dzi', 'Duzib212G0769' => 'dzi', 'Duzib268G0321' => 'dzi', 'ECA234G2742' => 'eca', 'ECA234G3496' => 'eca', 'ECA236G0225' => 'eca', 'ECA236G1667' => 'eca', 'ECA238G4095' => 'eca', 'ECA240G2656' => 'eca', 'ECA240G4691' => 'eca', 'EL10Ac1g00876' => 'bvu', 'EL10Ac3g07456' => 'bvu', 'EL10Ac5g12606' => 'bvu', 'Eucgr.C00223' => 'egr', 'Eucgr.C01241' => 'egr', 'Eucgr.D01992' => 'egr', 'Eucgr.D02464' => 'egr', 'Eucgr.E00471' => 'egr', 'Eucgr.H02683' => 'egr', 'FAN01G3088' => 'fan', 'FAN03G1632' => 'fan', 'FAN04G1991' => 'fan', 'FAN05G3784' => 'fan', 'FAN06G2058' => 'fan', 'FAN06G3253' => 'fan', 'FAN06G4719' => 'fan', 'FAN07G2747' => 'fan', 'FAN08G1975' => 'fan', 'FAN10G1823' => 'fan', 'FAN10G2583' => 'fan', 'FAN10G3475' => 'fan', 'FAN12G2888' => 'fan', 'FAN12G4004' => 'fan', 'FAN13G0917' => 'fan', 'FAN15G3588' => 'fan', 'FAN15G3648' => 'fan', 'FAN17G2572' => 'fan', 'FAN17G2744' => 'fan', 'FAN18G4188' => 'fan', 'FAN19G1164' => 'fan', 'FAN22G0196' => 'fan', 'FAN22G0451' => 'fan', 'FvH4_4g10050' => 'fve', 'FvH4_4g13320' => 'fve', 'FvH4_5g00620' => 'fve', 'FvH4_7g11540' => 'fve', 'Glyma.01G139500' => 'gma', 'Glyma.02G208000' => 'gma', 'Glyma.03G027300' => 'gma', 'Glyma.05G052100' => 'gma', 'Glyma.05G152300' => 'gma', 'Glyma.08G109100' => 'gma', 'Glyma.09G232900' => 'gma', 'Glyma.11G254900' => 'gma', 'Glyma.17G069600' => 'gma', 'Glyma.17G134300' => 'gma', 'Glyma.18G002200' => 'gma', 'Gohir.A02G019300' => 'ghi', 'Gohir.A05G345866' => 'ghi', 'Gohir.A07G146200' => 'ghi', 'Gohir.A08G030800' => 'ghi', 'Gohir.A08G135600' => 'ghi', 'Gohir.A08G173500' => 'ghi', 'Gohir.A08G235900' => 'ghi', 'Gohir.A10G127600' => 'ghi', 'Gohir.A11G080200' => 'ghi', 'Gohir.A11G213200' => 'ghi', 'Gohir.D02G022600' => 'ghi', 'Gohir.D04G086700' => 'ghi', 'Gohir.D07G152300' => 'ghi', 'Gohir.D08G041900' => 'ghi', 'Gohir.D08G098050' => 'ghi', 'Gohir.D08G156400' => 'ghi', 'Gohir.D08G192200' => 'ghi', 'Gohir.D08G256300' => 'ghi', 'Gohir.D10G138400' => 'ghi', 'Gohir.D11G084900' => 'ghi', 'Gohir.D11G210000' => 'ghi', 'Gorai.001G174300' => 'gra', 'Gorai.004G040600' => 'gra', 'Gorai.004G105200' => 'gra', 'Gorai.004G162700' => 'gra', 'Gorai.004G202200' => 'gra', 'Gorai.004G273500' => 'gra', 'Gorai.005G028000' => 'gra', 'Gorai.007G090500' => 'gra', 'Gorai.007G225300' => 'gra', 'Gorai.011G153500' => 'gra', 'Gorai.012G096800' => 'gra', 'GSVIVG01004648001' => 'vvi', 'GSVIVG01004919001' => 'vvi', 'GSVIVG01018554001' => 'vvi', 'GSVIVG01027676001' => 'vvi', 'HanXRQChr00c0003g0570991' => 'han', 'HanXRQChr00c0153g0572071' => 'han', 'HanXRQChr02g0031951' => 'han', 'HanXRQChr02g0046311' => 'han', 'HanXRQChr02g0058491' => 'han', 'HanXRQChr03g0066181' => 'han', 'HanXRQChr03g0068631' => 'han', 'HanXRQChr04g0100241' => 'han', 'HanXRQChr04g0122741' => 'han', 'HanXRQChr05g0132031' => 'han', 'HanXRQChr05g0139271' => 'han', 'HanXRQChr06g0184471' => 'han', 'HanXRQChr07g0186671' => 'han', 'HanXRQChr10g0310801' => 'han', 'HanXRQChr10g0310811' => 'han', 'HanXRQChr13g0391481' => 'han', 'HanXRQChr13g0391511' => 'han', 'HanXRQChr13g0391521' => 'han', 'HanXRQChr13g0391591' => 'han', 'HanXRQChr13g0391621' => 'han', 'HanXRQChr13g0423831' => 'han', 'HanXRQChr13g0423861' => 'han', 'HanXRQChr13g0423941' => 'han', 'HanXRQChr13g0423961' => 'han', 'HanXRQChr13g0424011' => 'han', 'HanXRQChr13g0424041' => 'han', 'HanXRQChr13g0424111' => 'han', 'HanXRQChr13g0424191' => 'han', 'HanXRQChr13g0424991' => 'han', 'HanXRQChr13g0425091' => 'han', 'HanXRQChr13g0425291' => 'han', 'HanXRQChr13g0425311' => 'han', 'HanXRQChr13g0425351' => 'han', 'HanXRQChr13g0425401' => 'han', 'HanXRQChr13g0425691' => 'han', 'HanXRQChr13g0425701' => 'han', 'HanXRQChr13g0425871' => 'han', 'HanXRQChr14g0435711' => 'han', 'HanXRQChr15g0468581' => 'han', 'HanXRQChr15g0487551' => 'han', 'HanXRQChr16g0520011' => 'han', 'HanXRQChr16g0532541' => 'han', 'HanXRQChr17g0549201' => 'han', 'Haze_08608' => 'cav', 'Haze_11651' => 'cav', 'Haze_21262' => 'cav', 'Hma1.2p1_0156F.1_g068630' => 'hma', 'Hma1.2p1_0301F.1_g118620' => 'hma', 'Hma1.2p1_0325F.1_g126100' => 'hma', 'Hma1.2p1_0349F.1_g132180' => 'hma', 'Hma1.2p1_1535F.1_g289460' => 'hma', 'Hma1.2p1_1654F.1_g295910' => 'hma', 'HPP92_009943' => 'vpl', 'HPP92_009944' => 'vpl', 'HPP92_010487' => 'vpl', 'HPP92_017441' => 'vpl', 'HPP92_017458' => 'vpl', 'HPP92_020642' => 'vpl', 'Hund19008' => 'sun', 'Hund24412' => 'sun', 'Lalb_Chr05g0225441' => 'lal', 'Lalb_Chr07g0180021' => 'lal', 'Lalb_Chr07g0189901' => 'lal', 'Lalb_Chr08g0230441' => 'lal', 'Lalb_Chr11g0075891' => 'lal', 'Lalb_Chr11g0075901' => 'lal', 'Lalb_Chr12g0198881' => 'lal', 'Lalb_Chr12g0208201' => 'lal', 'Lalb_Chr19g0127311' => 'lal', 'Lj2A208T51' => 'lonja', 'Lj2g0016661' => 'lja', 'Lj3g0020672' => 'lja', 'Lj4g0011735' => 'lja', 'Lj4g0023569' => 'lja', 'Lj6A382T17' => 'lonja', 'Lj6g0014221' => 'lja', 'Lj7A530T86' => 'lonja', 'Lj7P465T31' => 'lonja', 'Lj9P568T25' => 'lonja', 'Lj9P726T23' => 'lonja', 'Lsat_1_v5_gn_2_47461' => 'lsa', 'Lsat_1_v5_gn_2_83720' => 'lsa', 'Lsat_1_v5_gn_3_132201' => 'lsa', 'Lsat_1_v5_gn_3_4041' => 'lsa', 'Lsat_1_v5_gn_4_43401' => 'lsa', 'Lsat_1_v5_gn_5_87781' => 'lsa', 'Lsat_1_v5_gn_6_59160' => 'lsa', 'Lsat_1_v5_gn_6_9861' => 'lsa', 'Lsat_1_v5_gn_7_51000' => 'lsa', 'Lsat_1_v5_gn_7_9700' => 'lsa', 'Lsat_1_v5_gn_8_64581' => 'lsa', 'Manes.01G074000' => 'mes', 'Manes.01G266700' => 'mes', 'Manes.03G144400' => 'mes', 'Manes.05G046800' => 'mes', 'Manes.06G136800' => 'mes', 'Manes.14G033800' => 'mes', 'Manes.14G147600' => 'mes', 'Manes.15G056600' => 'mes', 'Mapoly0027s0071' => 'mpo', 'Mapoly0051s0058' => 'mpo', 'Mapoly0068s0025' => 'mpo', 'Mapoly0072s0070' => 'mpo', 'Mapoly0072s0071' => 'mpo', 'MBI04_g30226_MAGBIO' => 'mbi', 'MBI07_g45037_MAGBIO' => 'mbi', 'MBI12_g31641_MAGBIO' => 'mbi', 'MBI14_g34452_MAGBIO' => 'mbi', 'MBI14_g41162_MAGBIO' => 'mbi', 'MBI15_g07479_MAGBIO' => 'mbi', 'MCO04G516' => 'mco', 'MCO13G002' => 'mco', 'MD05G1230600' => 'mdo', 'MD06G1075100' => 'mdo', 'MD07G1119800' => 'mdo', 'MD07G1120100' => 'mdo', 'MD07G1256800' => 'mdo', 'MD13G1274600' => 'mdo', 'MD16G1260200' => 'mdo', 'Medtr0354s0040' => 'mtr', 'Medtr3g084090' => 'mtr', 'Medtr4g024600' => 'mtr', 'Medtr4g101940' => 'mtr', 'Medtr4g102270' => 'mtr', 'Medtr4g129820' => 'mtr', 'Medtr5g011940' => 'mtr', 'MELO3C006198.2' => 'cme', 'MELO3C006828.2' => 'cme', 'MELO3C010186.2' => 'cme', 'MELO3C013979.2' => 'cme', 'MELO3C020428.2' => 'cme', 'MELO3C027332.2' => 'cme', 'Migut.A00830' => 'egut', 'Migut.B01622' => 'egut', 'Migut.F00444' => 'egut', 'Migut.G00759' => 'egut', 'Migut.J01406' => 'egut', 'Migut.K00286' => 'egut', 'Migut.N01624' => 'egut', 'MSTRG.12064' => 'ama', 'MSTRG.17177' => 'ama', 'MSTRG.19669' => 'ama', 'MSTRG.25546' => 'ama', 'MSTRG.26247' => 'ama', 'MSTRG.27181' => 'ama', 'MSTRG.4245' => 'ama', 'MSTRG.6173' => 'ama', 'MSTRG.8811' => 'ama', 'Nitab4.5_0000072g0510' => 'nta', 'Nitab4.5_0000457g0090' => 'nta', 'Nitab4.5_0000481g0040' => 'nta', 'Nitab4.5_0000676g0010' => 'nta', 'Nitab4.5_0000697g0180' => 'nta', 'Nitab4.5_0001153g0150' => 'nta', 'Nitab4.5_0001329g0080' => 'nta', 'Nitab4.5_0001427g0060' => 'nta', 'Nitab4.5_0002587g0040' => 'nta', 'Nitab4.5_0003530g0030' => 'nta', 'Nitab4.5_0003534g0010' => 'nta', 'Nitab4.5_0003912g0010' => 'nta', 'Nitab4.5_0004552g0010' => 'nta', 'Nitab4.5_0004552g0020' => 'nta', 'Nitab4.5_0004850g0010' => 'nta', 'Nitab4.5_0005272g0030' => 'nta', 'Nitab4.5_0007591g0030' => 'nta', 'Nitab4.5_0007705g0010' => 'nta', 'Nitab4.5_0011815g0010' => 'nta', 'Nitab4.5_0013076g0020' => 'nta', 'Nn1g01140' => 'nnu', 'Nn1g04470' => 'nnu', 'Nn1g08189' => 'nnu', 'Nn2g12533' => 'nnu', 'Nn5g30671' => 'nnu', 'Oeu003478.1' => 'oeu', 'Oeu005798.1' => 'oeu', 'Oeu011924.1' => 'oeu', 'Oeu025564.1' => 'oeu', 'Oeu034320.1' => 'oeu', 'Oeu037921.1' => 'oeu', 'Oeu037923.1' => 'oeu', 'Oeu039994.1' => 'oeu', 'Oeu045643.1' => 'oeu', 'Oeu054257.1' => 'oeu', 'Oeu055500.1' => 'oeu', 'Oeu056427.1' => 'oeu', 'Oeu064094.1' => 'oeu', 'Oeu064095.1' => 'oeu', 'Oeu064472.1' => 'oeu', 'Os02g0791500' => 'osa', 'Os03g0249500' => 'osa', 'Os06g0187200' => 'osa', 'Os08g0526100' => 'osa', 'Os09g0504000' => 'osa', 'Peaxi162Scf00013g00321' => 'pax', 'Peaxi162Scf00047g10011' => 'pax', 'Peaxi162Scf00159g00031' => 'pax', 'Peaxi162Scf00177g10124' => 'pax', 'Peaxi162Scf00238g00091' => 'pax', 'Peaxi162Scf00244g00145' => 'pax', 'Peaxi162Scf00271g00003' => 'pax', 'Peaxi162Scf00652g00014' => 'pax', 'Peaxi162Scf00959g00023' => 'pax', 'Peaxi162Scf01372g00001' => 'pax', 'PGR004G1977' => 'pgr', 'PGR031G1228' => 'pgr', 'PGR042G1895' => 'pgr', 'PGR042G3509' => 'pgr', 'PGR083G2194' => 'pgr', 'PGR102G1720' => 'pgr', 'PGSC0003DMG400003960' => 'stu', 'PGSC0003DMG400004659' => 'stu', 'PGSC0003DMG400007017' => 'stu', 'PGSC0003DMG400007816' => 'stu', 'PGSC0003DMG400009591' => 'stu', 'PGSC0003DMG400011222' => 'stu', 'PGSC0003DMG400015746' => 'stu', 'PGSC0003DMG400020589' => 'stu', 'PGSC0003DMG400026005' => 'stu', 'PGSC0003DMG401023002' => 'stu', 'PGSC0003DMG402023002' => 'stu', 'Phvul.001G267000' => 'pvu', 'Phvul.003G152300' => 'pvu', 'Phvul.003G214400' => 'pvu', 'Phvul.010G082300' => 'pvu', 'Potri.001G320000' => 'ptr', 'Potri.002G146500' => 'ptr', 'Potri.003G114600' => 'ptr', 'Potri.006G178500' => 'ptr', 'Potri.012G128200' => 'ptr', 'Potri.014G068400' => 'ptr', 'Potri.017G059100' => 'ptr', 'Potri.018G100400' => 'ptr', 'Pp3c11_14370' => 'ppa', 'Pp3c12_18890' => 'ppa', 'Pp3c12_8990' => 'ppa', 'Pp3c13_8670' => 'ppa', 'Pp3c1_8080' => 'ppa', 'Pp3c1_8090' => 'ppa', 'Pp3c4_14450' => 'ppa', 'Pp3c4_21280' => 'ppa', 'Pp3c7_19260' => 'ppa', 'Pp3c8_16150' => 'ppa', 'PRCOL_00002229' => 'pco', 'PRCOL_00004804' => 'pco', 'Prupe.1G099000' => 'ppe', 'Prupe.1G164800' => 'ppe', 'Prupe.2G143800' => 'ppe', 'Prupe.2G280900' => 'ppe', 'Prupe.5G079000' => 'ppe', 'Psat0s1757g0040' => 'psa', 'Psat0s3258g0040' => 'psa', 'Psat2g179280' => 'psa', 'Psat3g168160' => 'psa', 'Psat4g068200' => 'psa', 'Psat5g100240' => 'psa', 'PSO017G4744' => 'pso', 'PSO063G4923' => 'pso', 'PSO210G4518' => 'pso', 'PSO210G5973' => 'pso', 'PSO447G0248' => 'pso', 'PSO478G0120' => 'pso', 'PSO782G4738' => 'pso', 'PSO832G3449' => 'pso', 'QL02p095329' => 'qlo', 'QL06p025978' => 'qlo', 'QL08p052710' => 'qlo', 'QL09p019018' => 'qlo', 'QL12p014901' => 'qlo', 'RcHm_v2.0_Chr1g0349981' => 'rch', 'RcHm_v2.0_Chr1g0349991' => 'rch', 'RcHm_v2.0_Chr4g0405111' => 'rch', 'RcHm_v2.0_Chr4g0413621' => 'rch', 'RcHm_v2.0_Chr7g0201641' => 'rch', 'Rhsim01G0015800' => 'rsi', 'Rhsim01G0149100' => 'rsi', 'Rhsim03G0261600' => 'rsi', 'Rhsim07G0028600' => 'rsi', 'Rhsim09G0060100' => 'rsi', 'Rhsim11G0086000' => 'rsi', 'Sabra02G0114100' => 'sbr', 'Sabra03G0079400' => 'sbr', 'Sabra06G0135700' => 'sbr', 'Sabra12G0096200' => 'sbr', 'Sabra14G0048000' => 'sbr', 'Sabra16G0202700' => 'sbr', 'Sabra17G0052700' => 'sbr', 'Sabra18G0086600' => 'sbr', 'SalBow5G4515' => 'sbo', 'SalBow6G0110' => 'sbo', 'SalBow6G3904' => 'sbo', 'SalBow7G1362' => 'sbo', 'SalBow7G2326' => 'sbo', 'SalBow7G4275' => 'sbo', 'SalBow8G0192' => 'sbo', 'Sc02g0002640' => 'sci', 'Sc08g0005660' => 'sci', 'Sc08g0005670' => 'sci', 'Sc13g0000410' => 'sci', 'Sc22g0000610' => 'sci', 'Sc23g0003660' => 'sci', 'Sed0011329' => 'sed', 'Sed0014910' => 'sed', 'Sed0018436' => 'sed', 'Sed0018491' => 'sed', 'Sed0021123' => 'sed', 'Sed0024747' => 'sed', 'Sed0028206' => 'sed', 'SEGI_01747' => 'sgi', 'SEGI_07004' => 'sgi', 'SEGI_10507' => 'sgi', 'SEGI_19268' => 'sgi', 'SEGI_29682' => 'sgi', 'SEGI_35449' => 'sgi', 'SGA_v2.0_scaffold11G05571' => 'sas', 'SGA_v2.0_scaffold146G36174' => 'sas', 'SGA_v2.0_scaffold153G36999' => 'sas', 'SGA_v2.0_scaffold2436G54121' => 'sas', 'SGA_v2.0_scaffold2G01167' => 'sas', 'SGA_v2.0_scaffold43G16487' => 'sas', 'SGA_v2.0_scaffold66G22523' => 'sas', 'SGA_v2.0_scaffold95G28905' => 'sas', 'SHI03034' => 'shi', 'SHI13541' => 'shi', 'SMO119G0180' => 'smo', 'SMO351G0030' => 'smo', 'SMO353G0045' => 'smo', 'SMO364G0486' => 'smo', 'Solyc01g091200.4' => 'sly', 'Solyc03g083550.1' => 'sly', 'Solyc05g050990.1' => 'sly', 'Solyc05g053790.1' => 'sly', 'Solyc07g006220.2' => 'sly', 'Solyc08g079440.1' => 'sly', 'Solyc09g092330.3' => 'sly', 'Solyc10g018260.1' => 'sly', 'Solyc12g010540.1' => 'sly', 'Solyc12g098480.1' => 'sly', 'Sopen01g036950' => 'spe', 'Sopen03g023360' => 'spe', 'Sopen05g029460' => 'spe', 'Sopen05g032260' => 'spe', 'Sopen07g002320' => 'spe', 'Sopen08g027810' => 'spe', 'Sopen09g035230' => 'spe', 'Sopen10g007490' => 'spe', 'Sopen12g005550' => 'spe', 'Sopen12g033260' => 'spe', 'Sopen12g033320' => 'spe', 'Sp1g00300' => 'spa', 'Sp3g21540' => 'spa', 'Sp4g27330' => 'spa', 'Sp6g00170' => 'spa', 'Sp6g05310' => 'spa', 'Sp7g28320' => 'spa', 'TAR362G0457' => 'tar', 'TAR375G0274' => 'tar', 'TAR376G0654' => 'tar', 'TAR383G0792' => 'tar', 'TAR625G1350' => 'tar', 'TAR629G0076' => 'tar', 'TAR629G2832' => 'tar', 'TAR636G0936' => 'tar', 'TAR636G1439' => 'tar', 'TAR636G1898' => 'tar', 'TAR684G0003' => 'tar', 'THA.LOC104801479' => 'tha', 'THA.LOC104803522' => 'tha', 'THA.LOC104808695' => 'tha', 'THA.LOC104813267' => 'tha', 'THA.LOC104813858' => 'tha', 'THA.LOC104814110' => 'tha', 'THA.LOC104817244' => 'tha', 'Thecc.01G378300' => 'tca', 'Thecc.03G261200' => 'tca', 'Thecc.04G195300' => 'tca', 'Thecc.09G158500' => 'tca', 'Thhalv10001454m.g' => 'esa', 'Thhalv10002521m.g' => 'esa', 'Thhalv10025193m.g' => 'esa', 'Thhalv10028667m.g' => 'esa', 'Thhalv10028672m.g' => 'esa', 'TPR.G13219' => 'tpr', 'TPR.G19692' => 'tpr', 'TPR.G24883' => 'tpr', 'TPR.G31332' => 'tpr', 'TPR.G37693' => 'tpr', 'TPR.G39094' => 'tpr', 'TWI14G1103' => 'twi', 'TWI23G0282' => 'twi', 'TWI32G0265' => 'twi', 'TWI60G1280' => 'twi', 'TWI63G0029' => 'twi', 'TWI73G1011' => 'twi', 'TWI81G0272' => 'twi', 'unitig_0.g564' => 'ugi', 'unitig_22.g5382' => 'ugi', 'unitig_22.g5487' => 'ugi', 'unitig_37.g12035' => 'ugi', 'unitig_8.g3331' => 'ugi', 'unitig_8.g3332' => 'ugi', 'unitig_8.g3387' => 'ugi', 'unitig_8.g3908' => 'ugi', 'unitig_8.g3909' => 'ugi', 'unitig_92.g28202' => 'ugi', 'vmacro00227' => 'vma', 'vmacro00438' => 'vma', 'vmacro06042' => 'vma', 'vmacro13412' => 'vma', 'vmacro21021' => 'vma', 'VMungo0331G1199' => 'vmu', 'VMungo1215G0112' => 'vmu', 'VMungo1215G1593' => 'vmu', 'VMungo1383G2956' => 'vmu', 'Zm00001eb010710' => 'zma', 'Zm00001eb036220' => 'zma', 'Zm00001eb252270' => 'zma', 'Zm00001eb257590' => 'zma', 'Zm00001eb278370' => 'zma', 'Zm00001eb280450' => 'zma', 'Zm00001eb287360' => 'zma', 'Zm00001eb317540' => 'zma', 'Zm00001eb374410' => 'zma', 'Zm00001eb398580' => 'zma', 'Zm00001eb438750' => 'zma' ) $gf_id = 'HOM05D000796' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000796' ) $data_identifier = 'HOM05D000796' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 8, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 7, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 6, 'bca' => (int) 23, 'bol' => (int) 10, 'bra' => (int) 9, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 7, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 8, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 6, 'dca' => (int) 6, 'din' => (int) 6, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 23, 'fve' => (int) 4, 'gma' => (int) 11, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 43, 'cav' => (int) 3, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 9, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 11, 'mes' => (int) 8, 'mpo' => (int) 5, 'mbi' => (int) 6, 'mco' => (int) 2, 'mdo' => (int) 7, 'mtr' => (int) 7, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 20, 'nnu' => (int) 5, 'oeu' => (int) 15, 'osa' => (int) 5, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 11, 'pvu' => (int) 4, 'ptr' => (int) 8, 'ppa' => (int) 10, 'pco' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 10, 'spe' => (int) 11, 'spa' => (int) 6, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 5, 'tpr' => (int) 6, 'twi' => (int) 7, 'ugi' => (int) 10, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438750' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1